Integrate Osquery Manager with ELK Stack

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This guide will take you through how to integrate Osquery manager with ELK Stack. According to their Github page, osquery is a SQL powered operating system instrumentation, monitoring, and analytics framework. It is available for Linux, macOS, Windows, and FreeBSD.

It allows you to query the operating system just like you would query any records from the usual relational databases thus providing you with visibility into your infrastructure and operating systems.

Integrating Osquery Manager with ELK Stack

Recent versions of ELK now supports integration with Osquery manager right from the Kibana UI. According to this press release by Elastic;

The osquery host management integration, now in beta, enables security teams to use osquery results to address cyber threats without the complexity or cost of a separate management layer. With one click, users can install and orchestrate osquery across their Windows, macOS, and Linux hosts.

Osquery data is ingested in Elasticsearch and shown in Kibana where users can run live queries with one or more agents, and define scheduled queries to capture changes to an organization’s security state. From a single pane of glass, users can centralize security analytics and contextualize osquery results against other event data, anomalies, and threats, and leverage that context to improve host visibility, analytical power, and monitoring.

Enhanced capabilities also include prebuilt and custom SQL queries, as well as Kibana query guidance to support users with code completion, code hinting, and content assistance.

With Osquery in Kibana, you can:

  • Run live queries for one or more agents
  • Schedule query packs to capture changes to OS state over time
  • View a history of past queries and their results
  • Save queries and build a library of queries for specific use cases

To begin with, setup and configure Fleet Server on ELK cluster

Check our previous guide on how to;

Configure and Setup Fleet Server

Install and Enroll agents on remote hosts to monitor

Check this guide as well;

Install and Enroll Elastic Agents to Fleet Manager in Linux

Add Osquery Manager to Kibana

Once the above is done, head over to Kibana > Management > Osquery > Add Osquery Manager.

Integrate Osquery Manager with ELK Stack

Under Osquery Manager, head over to Settings and install Osquery manager which is required to setup Kibana and Elasticsearch assets designed for Osquery Manager data by clicking on Install Osquery Manager assets and confirming the installation on the default Kibana space.

install osquery manager assets

Once installed, the settings tab should now show installed and latest version of Osquery manager. You will also see other tabs added as Integration policies and Assets.

add osquery man to fleet

Next, add Osquery manager integration to the fleet by clicking the Add Osquery Manager button as highlighted on the screenshot above.

Osquery manager integration configuration page opens up.

configure osquery manager integration

We will go with the default settings, hence click Save and continue at the bottom of the page.

The configurations will be applied to the Elastic agents already enrolled to the Fleet. Thus confirm and proceed.

Once the changes are saved;

  • you will see that the integration policies are updated.
  • You cannot also uninstall the Osquery manager unless you remove all the integrations.

Please note that in order for you to use Osquery manager, there are some privileges required;

  • Read privileges for the logs-osquery_manager.result* index.
  • Kibana privileges for Osquery Manager.
    • The All privilege enables you to run, schedule, and save queries. 
    • Read enables you to view live and scheduled query results, but you cannot run live queries or edit.

Under advanced tab, you will see live queries and packs;

  • Live queries are queries you can run on the fly to query your endpoints
  • Packs are a set of queries that perform various activities.
osquery live quiries n packs

You can also access Osquery Manager Live queries/Pack settings from Kibana Management menu > Osquery.

osquery live quiries n packs.png 2

Querying Remote Host using Elastic Osquery Manager

Now that integration is done, you can query your remote hosts as you would while using stand alone Osquery manager.

Configure Elastic Agent Osquerybeats TLS connection with Elastic stack

Note that when you setup Osquery manager integration, it will automatically install osquerybeats on the Elastic agents already enrolled on to the Fleet manager.

Thus, if you setup Fleet server/Elastic with HTTPS, you need to configure Osquerybeat with HTTPS to enable communication with Elasticsearch.

In our Elastic agent host, we installed the agent from the repos, thus the configuration files for Osquerybeat is localted at /var/lib/elastic-agent/data/elastic-agent-XXXXXX/install/osquerybeat-VERSION-linux-x86_64/osquerybeat.yml,

If you installed via the TAR file, this config would be located at /opt/Elastic/Agent/data/elastic-agent-XXXXXX/install/osquerybeat-VERSION-linux-x86_64/osquerybeat.yml


  • XXXXXX is some random number.
  • VERSION is the Elastic version number.

Thus, open the respective file for editing and update Elasticsearch output configs;

vim /var/lib/elastic-agent/data/elastic-agent-7e56c4/install/osquerybeat-7.16.1-linux-x86_64/osquerybeat.yml
# ---------------------------- Elasticsearch Output ----------------------------
  # Array of hosts to connect to.
  hosts: [""]

  # Protocol - either `http` (default) or `https`.
  protocol: "https"
  ssl.certificate_authorities: ["/etc/ssl/certs/kifarunix-demo-fleet-server.crt"]

  # Authentication credentials - either API key or username/password.
  #api_key: "id:api_key"
  username: "elastic"
  password: "WSZdCjtgn9c8Pphd4St4"

Once you are done, restart Elastic Agent;

systemctl restart elastic-agent

Query Remote Elastic Agent Host using Osquery Manager

To query a remote host;

  • Click New live query
  • Choose remote host to query based on the elastic agent installation from the list.
  • Choose a query from saved queries if you already saved some. Otherwise, create a new query. For example a query to get all currently logged in users;
select user,tty,host,time from logged_in_users where tty not like '~';

Read more on osquery schema.

  • Enter the query and click Submit to run the query on remote host;
live query
  • Check the live query results.
live query results

Other sample output for the query;

select * from users;
live query results 2
  • You can view the results in Kibana discover or in lens to create visualization.
  • You can now run any other query you want on your host with just on click.
  • You can also schedule queries with packs.

Elastic Agent Logs

Be sure to check Elastic agent logs in the directory;


Sample log files;


Also check how to monitor Windows systems using Elastic Osquery Manager;

Monitor Windows Systems using Elastic Osquery Manager


Osquery Kibana guide

Other Tutorials

Install and Enroll Elastic Agents to Fleet Manager in Linux

Install Osquery on Rocky Linux 8

Install Fleet Osquery Manager on Debian 10


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