Enroll Windows Systems into Osquery Fleet Manager

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Welcome to our guide on how to enroll Windows systems into Osquery Fleet Manager. Fleet is the most widely used open source osquery manager. Deploying osquery with Fleet enables programmable live queries, streaming logs, and effective management of osquery across 50,000+ servers, containers, and laptops. It’s especially useful for talking to multiple devices at the same time.

Enroll Windows Systems into Osquery Fleet Manager

There are different ways in which you can enroll Windows systems on OSquery Fleet manager;

Enroll Windows Systems using Fleet-Osquery Windows Package

Install Fleetctl on Fleet Manager

To enroll Windows systems using Fleet-Osquery Package, ensure that Fleetctl command is installed on the Fleet Manager. Fleetctl will be used to generate Fleet-osquery MSI installer for Windows systems.

If not already installed, you can install Fleetctl on the Fleet Manager as follows;

wget https://github.com/fleetdm/fleet/releases/download/fleet-v4.20.1/fleetctl_v4.20.1_linux.zip -P /tmp
  • Extract and place the fleetctl binary under /usr/local/bin;
sudo unzip -j /tmp/fleetctl_v4.20.1_linux.zip "fleetctl_v4.20.1_linux/fleetctl" -d /usr/local/bin/

Install Docker on Fleet Manager Host

Install Docker on the Fleet manager host. This is required to generate osquery MSI installer.

docker remove podman buildah
dnf install docker-ce

Once installed, start the docker service;

systemctl start docker

Consult your Linux distribution documentation on how to install Docker.

Generate Fleet-osquery Windows Package

Once you have installed Fleetctl command on the Fleet Manager, navigate to Fleet Manager web UI > Hosts > Add hosts > Windows.

Enroll Windows Systems into Osquery Fleet Manager

Copy the osquery installer package generating command on the wizard above and execute it on the Fleet Manager. The command will generate MSI installer.

fleetctl package --type=msi --fleet-desktop \
--fleet-url=https://fleet.kifarunix-demo.com:8080 \

Sample command output;

Generating your osquery installer...
Unable to find image 'fleetdm/wix:latest' locally
latest: Pulling from fleetdm/wix
7d63c13d9b9b: Pull complete 
d6b3bca85310: Pull complete 
26a41d401cc6: Pull complete 
1a28001a7315: Pull complete 
86ad66875459: Pull complete 
4f4fb700ef54: Pull complete 
Digest: sha256:3183e1a702efe74cef600b73c193605bed5aeff53f09cf858b86fe66efdd8e3e
Status: Downloaded newer image for fleetdm/wix:latest
Windows Installer XML Toolset Toolset Harvester version 
Copyright (c) .NET Foundation and contributors. All rights reserved.

Windows Installer XML Toolset Compiler version 
Copyright (c) .NET Foundation and contributors. All rights reserved.

Windows Installer XML Toolset Linker version 
Copyright (c) .NET Foundation and contributors. All rights reserved.

Success! You generated an osquery installer at /root/fleet-osquery.msi

To add this device to Fleet, double-click to open your installer.

To add other devices to Fleet, distribute this installer using Chef, Ansible, Jamf, or Puppet. Learn how: https://fleetdm.com/docs/using-fleet/adding-hosts

The command generates fleet-osquery.msi installer on the current working directory.

Install Fleet Osquery Package on Windows system

Copy the Fleet Osquery MSI installer to the Windows System and install it by double clicking on the MSI.

You can as well execute the MSI on the powershell.


The Fleet-osquery will be installed as Orbit program, C:\Program Files\Orbit;

fleet osquery orbit program

The installer will also create Fleet-osquery service;

Get-Service -Name "fleet*"
Status   Name               DisplayName
------   ----               -----------
Running  Fleet osquery      Fleet osquery

PS C:\Windows\system32>

Before you can start the Fleet-osquery service, download the Fleet manager TLS certificate, place it under the C:\ProgramData\fleet.pem

Next, edit the osquery.flags file and add the path to the TLS certificate by adding the line below;


Next, ensure that the Fleet server is reachable via the domain name;

ping fleet.kifarunix-demo.com

Pinging fleet.kifarunix-demo.com [] with 32 bytes of data:
Reply from bytes=32 time<1ms TTL=64
Reply from bytes=32 time<1ms TTL=64
Reply from bytes=32 time<1ms TTL=64
Reply from bytes=32 time=1ms TTL=64

Ping statistics for
    Packets: Sent = 4, Received = 4, Lost = 0 (0% loss),
Approximate round trip times in milli-seconds:
    Minimum = 0ms, Maximum = 1ms, Average = 0ms

Restart Fleet-osquery service;

Restart-Service 'Fleet osquery'

The agent should now show up on Fleet manager hosts page;

enroll windows host fleet osquery manager 1

Enroll Windows Systems using Plain Osquery Package

Install Osquery Package on Windows Systems

To enroll Windows systems using plain osquery package, you need to install Osquery package on Windows system first.

Follow the guide below;

Install Osquery on Windows system

Download Secret, Flags File and TLS Certificate from the Fleet Manager

Next, navigate to Fleet manager Hosts page > Add hosts > Advanced. Click Plain osquery drop down menu to expand the page.

Click on the individual download link to download enroll secret, fleet certificate and flagfile.

download secret flag tls files

We have downloaded these files to Windows host Downloads folder.

ls .\Downloads\
    Directory: C:\Users\kifarunix\Downloads

Mode                 LastWriteTime         Length Name
----                 -------------         ------ ----
-a----         9/29/2022  11:38 AM            822 flagfile.txt
-a----         9/29/2022  11:38 AM           1143 fleet.pem
-a----         9/29/2022  10:49 AM       17453056 osquery-5.5.1.msi
-a----         9/29/2022  11:38 AM             32 secret.txt

Move the secrets file and TLS certificate file to C:\ProgramsData folder or any other suitable folder for you. Ensure you run Powershell as Administrator, if using powershell to move the files.

mv .\Downloads\fleet.pem C:\ProgramData\
mv .\Downloads\secret.txt C:\ProgramData\

Replace the Osquery flagsfile with the flags file you downloaded from Fleet manager;

rm 'C:\Program Files\osquery\osquery.flags'
mv .\Downloads\flagfile.txt 'C:\Program Files\osquery\osquery.flags'

Next, open the Flags file and update the path to TLS and Secrets files;

notepad 'C:\Program Files\osquery\osquery.flags'

# Server
# Enrollment
# Configuration
# Live query
# Logging
# File carving

Save the changes

Restart Osquery Service to Enroll the Windows Host

Restart Osquery service;

Restart-Service osqueryd

You windows host should now be enrolled;

enroll windows host fleet osquery

And that is it on how to enroll Windows systems in Osquery Fleet Manager.

You can now run queries against your windows hosts;

Sample output of the query;

SELECT * from users;
fleet osquery query windows

That marks the end of this guide. Explore osquery further.

Other Tutorials

Install Fleet Osquery Manager on Oracle Linux

Monitor Windows Systems using Elastic Osquery Manager


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I am the Co-founder of Kifarunix.com, Linux and the whole FOSS enthusiast, Linux System Admin and a Blue Teamer who loves to share technological tips and hacks with others as a way of sharing knowledge as: "In vain have you acquired knowledge if you have not imparted it to others".

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